Defence minister Antoni Macierewicz, foreign minister Witold Waszczykowski and environment minister Jan Szyszko lose jobs as Premier Morawiecki tries to mend ties with EU partners.
Polish parliament to vote on a new government next Tuesday, and any ministerial changes are expected to be announced after that.
Relations between Poland's governing conservative party PiS and the EU Council President have been tense over court reforms.
During Turkish President Recep Tayyip Erdogan's one-day visit to Warsaw, aimed at boosting trade between the two countries, Polish President Andrzej Duda expressed support for Turkey's membership to the EU.
Western leaders have cited fears the Zapad war games could be a preparation for the occupation of Russia’s neighbours in Eastern Europe.
The European Commission will decide next month on any legal cases against countries failing to host migrants as agreed in a 2015 deal.
Polish foreign minister, reacting to Tusk's election, says ‘a very dangerous European relationship is being born.'
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